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SRX14934862: WGS data of Schistocerca cancellata (adult female), HiC data
1 ILLUMINA (Illumina NovaSeq 6000) run: 698.3M spots, 210.9G bases, 61.7Gb downloads

Design: According to DNA Zoo standard method described in Rao, Huntley et al., 2014
Submitted by: Behavioral Plasticity Research Institute (BPRI)
Study: Whole genome sequencing and chromosome-level assembly for six Schistocerca species (Orthoptera: Acrididae)
show Abstracthide Abstract
Foundational to the Behavioral Plasticity Research Institute's effort is the establishment of annotated genomes of six Schistocerca species to study the molecular basis of phenotypic plasticity in a comparative framework. We generate genome assemblies for S. gregaria, S. americana, S. piceifrons, S. serialis cubense, S. cancellata, and S. nitens, using high-quality long read sequencing technology, combined with chromatin sequencing and assembly expertise.To approach this challenge, we combined high fidelity long reads generated using Pacific Biosciences (PacBio) sequencers with Hi-C data. PacBio Hifi contigs (contiguous, gap-free DNA sequences) are generated at the United States Department of Agriculture (USDA) and Baylor College of Medicine (BCM) using Hifiasm. The assembled contigs are ordered and oriented into chromosome-length scaffolds using in situ Hi-C data generated at BCM, and 3D-DNA for automated scaffolding followed by Juicebox Assembly Tools for assembly finishing.
Sample: Cease Lab Colony (Arizona State University)
SAMN18214789 • SRS12641393 • All experiments • All runs
Library:
Name: BPRI_iqSchCanc2
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 698.3M spots, 210.9G bases, 61.7Gb
Run# of Spots# of BasesSizePublished
SRR18836884698,303,288210.9G61.7Gb2022-04-21

ID:
21374604

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